:AnnotatedSlice leaf node



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URI https://neuroshapes.org/AnnotatedSlice
Label Annotated Slice
Description The Annotated Slice is an entity which is a revision of a brain slice entity. In the annotated slice, some aspects of the brain slice are annotated, e.g. the location and name of stained cells contained within the slice or anatomical demarcations visible on the slice. In the LNMC laboratory at EPFL, a custom annotation Macro was created using Fiji to create a pipeline for the annotation of slices. This is described here: dx.doi.org/10.17504/protocols.io.ujveun6.
SubClassOf (1) prov:Entity


PropertyDescriptionExpected TypeCardinality (min,max)
Properties from shape AnnotatedSliceShape
hasPart The collections of labeled cells. LabeledCellCollection (1---None)
annotatorComment Comments added by the annotator during the annotation process. string (None---1)
annotationAngle Angle at which the slice is as defined during the annotation process. -- (None---1)
wasRevisionOf The FixedStainedSlice this AnnotatedSlice is a revision of. FixedStainedSlice (1---1)
Properties from shape EntityShape
invalidation Invalidation. Invalidation --
distribution A dataset in downloadable form. The downloadable form has a specific format and is located at a specific location. DataDownload --
sameAs URI of an entity sharing the same identity. IRI --
dateCreated Date at which this entity was created. dateTime (None---1)
license A Link towards the dataset license. License --
name The entity name. string (1---1)
image A reference to an entity representing an image that can be used as preview. IRI --
generation Generation. Generation --
contribution Information about the contribution of an agent during the generation of this dataset. Contribution --
language The dataset language. -- (None---1)
keywords Keywords describing the entity. string --
wasRevisionOf The entity for which this entity is a revision of. An entity revision is a specific type of derivation. IRI (None---1)
wasAttributedTo The agent to which this entity was attributed to. IRI --
url A landing page describing the entity. IRI --
description The entity description string (None---1)
wasDerivedFrom The entity from which this entity was derived from. IRI --
derivation A derivation is a transformation of an entity into another, an update of an entity resulting in a new one, or the construction of a new entity based on a pre-existing entity. Derivation --
dateModified The date of the last update of this entity. -- (None---1)
identifier Identifier -- --
citation A citation or reference to another creative work, such as another publication, web page, scholarly article, etc. -- --

@prefix : <https://neuroshapes.org/> .
@prefix commonshapes: <https://neuroshapes.org/commons/> .
@prefix context: <https://incf.github.io/neuroshapes/contexts/> .
@prefix datashapes: <https://neuroshapes.org/dash/> .
@prefix dc: <http://purl.org/dc/elements/1.1/> .
@prefix dcterms: <http://purl.org/dc/terms/> .
@prefix ns1: <https://bluebrain.github.io/nexus/vocabulary/> .
@prefix ns2: <https://neuroshapes.org/> .
@prefix nsg: <https://neuroshapes.org/> .
@prefix nsg1: <https://bbp-nexus.epfl.ch/vocabs/bbp/neurosciencegraph/core/v0.1.0/> .
@prefix nxv: <https://bbp-nexus.epfl.ch/vocabs/nexus/core/terms/v0.1.0/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix provcommonshapes: <https://provshapes.org/commons/> .
@prefix provdatashapes: <https://provshapes.org/datashapes/> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix schema: <http://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
@prefix vann: <http://purl.org/vocab/vann/> .
@prefix void: <http://rdfs.org/ns/void#> .
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

datashapes:annotatedslice a ns1:Schema ;
    owl:imports commonshapes:entity,
        commonshapes:quantitativevalue ;
    prov:wasDerivedFrom "https://github.com/INCF/neuroshapes/blob/v0.3.15/modules/morphology/src/main/resources/schemas/neurosciencegraph/morphology/annotatedslice/v0.1.0.json" ;
    ns1:shapes <https://neuroshapes.org/dash/annotatedslice/shapes/AnnotatedSliceShape> .
{
  "@context": "https://incf.github.io/neuroshapes/contexts/schema.json",
  "@id": "nsg:dash/annotatedslice",
  "@type": "nxv:Schema",
  "imports": [
    "nsg:commons/entity",
    "nsg:commons/quantitativevalue"
  ],
  "prov:wasDerivedFrom": "https://github.com/INCF/neuroshapes/blob/v0.3.15/modules/morphology/src/main/resources/schemas/neurosciencegraph/morphology/annotatedslice/v0.1.0.json",
  "shapes": [
    "nsg:dash/annotatedslice/shapes/AnnotatedSliceShape"
  ]
}

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