:BrainSlicing leaf node



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URI https://neuroshapes.org/BrainSlicing
Label Brain Slicing
Description The Brain Slicing describes an activity in which brain tissue is sliced using e.g. a vibratome for further experimentation such as whole-cell patch clamp recordings. In the LNMC laboratory at EPFL, the brain slicing procedure follows the protocol described here: dx.doi.org/10.17504/protocols.io.uqbevsn.
SubClassOf (2) :ExperimentalActivityprov:Activity


PropertyDescriptionExpected TypeCardinality (min,max)
Properties from shape BrainSlicingShape
solution Solution in which the brain was sliced (e.g. Ringer's solution) string (None---1)
used The subject used Subject (1---1)
brainLocation Brain location information -- --
generated The slice or slice collection generated SliceCollection (1---None)
slicingPlane Slicing plane of the brain -- (None---1)
hemisphere Brain hemisphere that was sliced -- (None---2)
cuttingThickness Cutting thickness of brain slice -- (None---1)
slicingAngle Slicing angle of brain string (None---1)
Properties from shape ActivityShape
used -- -- (1---None)
hadProtocol The value of nsg:hadProtocol should be of type nsg:Protocol. Protocol --

@prefix : <https://neuroshapes.org/> .
@prefix commonshapes: <https://neuroshapes.org/commons/> .
@prefix context: <https://incf.github.io/neuroshapes/contexts/> .
@prefix datashapes: <https://neuroshapes.org/dash/> .
@prefix dc: <http://purl.org/dc/elements/1.1/> .
@prefix dcterms: <http://purl.org/dc/terms/> .
@prefix ns1: <https://bluebrain.github.io/nexus/vocabulary/> .
@prefix ns2: <https://neuroshapes.org/> .
@prefix nsg: <https://neuroshapes.org/> .
@prefix nsg1: <https://bbp-nexus.epfl.ch/vocabs/bbp/neurosciencegraph/core/v0.1.0/> .
@prefix nxv: <https://bbp-nexus.epfl.ch/vocabs/nexus/core/terms/v0.1.0/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix provcommonshapes: <https://provshapes.org/commons/> .
@prefix provdatashapes: <https://provshapes.org/datashapes/> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix schema: <http://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
@prefix vann: <http://purl.org/vocab/vann/> .
@prefix void: <http://rdfs.org/ns/void#> .
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

datashapes:brainslicing a ns1:Schema ;
    owl:imports commonshapes:activity,
        commonshapes:brainlocation,
        commonshapes:quantitativevalue ;
    prov:wasDerivedFrom "https://github.com/INCF/neuroshapes/blob/v0.3.15/modules/experiment/src/main/resources/schemas/neurosciencegraph/experiment/brainslicing/v1.0.0.json" ;
    ns1:shapes <https://neuroshapes.org/dash/brainslicing/shapes/BrainSlicingShape> .
{
  "@context": "https://incf.github.io/neuroshapes/contexts/schema.json",
  "@id": "nsg:dash/brainslicing",
  "@type": "nxv:Schema",
  "imports": [
    "nsg:commons/activity",
    "nsg:commons/brainlocation",
    "nsg:commons/quantitativevalue"
  ],
  "prov:wasDerivedFrom": "https://github.com/INCF/neuroshapes/blob/v0.3.15/modules/experiment/src/main/resources/schemas/neurosciencegraph/experiment/brainslicing/v1.0.0.json",
  "shapes": [
    "nsg:dash/brainslicing/shapes/BrainSlicingShape"
  ]
}

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