:PHDataLayer leaf node



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URI https://neuroshapes.org/PHDataLayer
Label PHData Layer
Description The PH Data Layer is a volumetric data layer entity which belongs to the voxel brain data shape definition and describes the PH data. Voxel Brain is an in-house service of the Blue Brain Project which helps to access data already positioned in a volumetric atlas space.
SubClassOf (4) :VolumetricDataLayer:Volume:NdRasterprov:Entity



PropertyDescriptionExpected TypeCardinality (min,max)
Properties from shape VolumetricDataLayerShape
isRegisteredIn -- BrainAtlasSpatialReferenceSystem (None---1)
brainLocation Brain Location (brain region, atlas space). -- (1---1)
mType The morphology type of the reconstructed cell. CellType (None---1)
imageModality The modality of data capture (MRI, fMRI, EM, etc.) string (None---1)
resolution Resolution of the voxel. -- (1---1)
Properties from shape NdRasterShape
fileExtension Format of the file, by its extension ('nrrd', 'png', etc.) string (1---1)
endianness Endianness of the encoding, applicable for all componentDataType but not usefull for uint8 int8 and ascii -- (1---1)
bufferEncoding Encoding of the data part of the dataset (not the header) -- (1---1)
componentEncoding Encoding type of each component within a sample (pixels or voxels), if we have multiple components such as in RGB, vectors or quaternions, the componentDataType is applicable to each component. Ex: 'uint8', 'float32' -- (1---1)
worldMatrix Column major matrix to perform the affine transformation from voxel position to world position. In world position, the measurement unit is 'spatialUnit'. The size of this matrix is numberOfSpatialDimensions x numberOfSpatialDimensions. -- --
sampleType Description of what kind of element a sample (pixel or voxel) represent. It can be an intensity, a RGB color, a vector 2D or 3D, a quaternio, a label, a binary mask, etc. -- (1---1)
dimension List of dimensions, spectral (components), spatial or temporal, in the order of encoding in the buffer, from the fastest axis to the slowest axis. -- (1---None)
Properties from shape EntityShape
invalidation Invalidation. Invalidation --
distribution A dataset in downloadable form. The downloadable form has a specific format and is located at a specific location. DataDownload --
sameAs URI of an entity sharing the same identity. IRI --
dateCreated Date at which this entity was created. dateTime (None---1)
license A Link towards the dataset license. License --
name The entity name. string (1---1)
image A reference to an entity representing an image that can be used as preview. IRI --
generation Generation. Generation --
contribution Information about the contribution of an agent during the generation of this dataset. Contribution --
language The dataset language. -- (None---1)
keywords Keywords describing the entity. string --
wasRevisionOf The entity for which this entity is a revision of. An entity revision is a specific type of derivation. IRI (None---1)
wasAttributedTo The agent to which this entity was attributed to. IRI --
url A landing page describing the entity. IRI --
description The entity description string (None---1)
wasDerivedFrom The entity from which this entity was derived from. IRI --
derivation A derivation is a transformation of an entity into another, an update of an entity resulting in a new one, or the construction of a new entity based on a pre-existing entity. Derivation --
dateModified The date of the last update of this entity. -- (None---1)
identifier Identifier -- --
citation A citation or reference to another creative work, such as another publication, web page, scholarly article, etc. -- --

@prefix : <https://neuroshapes.org/> .
@prefix commonshapes: <https://neuroshapes.org/commons/> .
@prefix context: <https://incf.github.io/neuroshapes/contexts/> .
@prefix datashapes: <https://neuroshapes.org/dash/> .
@prefix dc: <http://purl.org/dc/elements/1.1/> .
@prefix dcterms: <http://purl.org/dc/terms/> .
@prefix ns1: <https://bluebrain.github.io/nexus/vocabulary/> .
@prefix ns2: <https://neuroshapes.org/> .
@prefix nsg: <https://neuroshapes.org/> .
@prefix nsg1: <https://bbp-nexus.epfl.ch/vocabs/bbp/neurosciencegraph/core/v0.1.0/> .
@prefix nxv: <https://bbp-nexus.epfl.ch/vocabs/nexus/core/terms/v0.1.0/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix provcommonshapes: <https://provshapes.org/commons/> .
@prefix provdatashapes: <https://provshapes.org/datashapes/> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix schema: <http://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
@prefix vann: <http://purl.org/vocab/vann/> .
@prefix void: <http://rdfs.org/ns/void#> .
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

datashapes:volumetricdatalayer a ns1:Schema ;
    owl:imports commonshapes:brainlocation,
        commonshapes:typedlabeledontologyterm,
        datashapes:ndraster ;
    prov:wasDerivedFrom "https://github.com/INCF/neuroshapes/blob/v0.3.15/modules/atlas/src/main/resources/schemas/neurosciencegraph/atlas/volumetricdatalayer/v1.0.0.json" ;
    ns1:shapes <https://neuroshapes.org/dash/volumetricdatalayer/shapes/BrainLocationShape>,
        <https://neuroshapes.org/dash/volumetricdatalayer/shapes/VolumetricDataLayerShape> .
{
  "@context": "https://incf.github.io/neuroshapes/contexts/schema.json",
  "@id": "nsg:dash/volumetricdatalayer",
  "@type": "nxv:Schema",
  "imports": [
    "nsg:commons/typedlabeledontologyterm",
    "nsg:dash/ndraster",
    "nsg:commons/brainlocation"
  ],
  "prov:wasDerivedFrom": "https://github.com/INCF/neuroshapes/blob/v0.3.15/modules/atlas/src/main/resources/schemas/neurosciencegraph/atlas/volumetricdatalayer/v1.0.0.json",
  "shapes": [
    "nsg:dash/volumetricdatalayer/shapes/VolumetricDataLayerShape",
    "nsg:dash/volumetricdatalayer/shapes/BrainLocationShape"
  ]
}

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